MLOC_32351 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains33.777617.956123.087620.4267
LEAShoots from the seedlings (10 cm shoot stage)21.162119.785229.390116.7772
INF1Young developing inflorescences (5mm)22.643726.319831.475218.8981
INF2Developing inflorescences (1-1.5 cm)19.166519.999421.151518.867
ROORoots from the seedlings (10 cm shoot stage)35.118428.746318.463228.6327
NODDeveloping tillers at six leaf stage, 3rd internode23.047634.385433.539585.3224
CAR5Developing grain, bracts removed (5 DPA)21.821323.194620.762318.3557
CAR15Developing grain, bracts removed (15 DPA)6.361876.80415.4814312.7536



CDS Structure of MLOC_32351






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_32351.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354292NoneNoneNoneNone
MLOC_32351.1CUST_176_PI427708083AvailableAvailablecontig_227821 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g01170.1 +2 7e-54 188 92/108 (85%) 13102.m00028 protein HECT-domain domain containing protein, expressed
TAIR PP10 AT4G38600.1 +2 3e-44 163 80/108 (74%) | Symbols: KAK, UPL3 | HEAT repeat ;HECT-domain (ubiquitin-transferase) | chr4:18041503-18049292 REVERSE LENGTH=1888