MLOC_32229 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.208351.622912.703753.45642
LEAShoots from the seedlings (10 cm shoot stage)117.7942.608884.1860636.0783
INF1Young developing inflorescences (5mm)0.3053740.0356400.171444
INF2Developing inflorescences (1-1.5 cm)2.155460.5611022.975332.20478
ROORoots from the seedlings (10 cm shoot stage)575.61319.053618.8282107.547
NODDeveloping tillers at six leaf stage, 3rd internode0.5496022.317910.5445626.30853
CAR5Developing grain, bracts removed (5 DPA)13.648518.174214.036718.8204
CAR15Developing grain, bracts removed (15 DPA)40.442748.339525.1222119.391



CDS Structure of MLOC_32229






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_32229.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374485NoneNoneNoneNone
MLOC_32229.1CUST_2127_PI427708080AvailableAvailablecontig_226559 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g08860.1 -3 5e-60 195 129/166 (78%) 13101.m00941 protein hsp20/alpha crystallin family protein, putative, expressed
TAIR PP10 AT5G12020.1 -3 9e-40 140 98/151 (65%) | Symbols: HSP17.6II | 17.6 kDa class II heat shock protein | chr5:3882409-3882876 REVERSE LENGTH=155