MLOC_32225 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains17.110811.046411.367112.6125
LEAShoots from the seedlings (10 cm shoot stage)11.27898.5250410.74498.38453
INF1Young developing inflorescences (5mm)24.561628.295531.036323.9605
INF2Developing inflorescences (1-1.5 cm)19.970817.949825.239121.8736
ROORoots from the seedlings (10 cm shoot stage)24.20621.758319.007724.756
NODDeveloping tillers at six leaf stage, 3rd internode30.843230.741634.291890.0591
CAR5Developing grain, bracts removed (5 DPA)12.745612.619213.183312.2902
CAR15Developing grain, bracts removed (15 DPA)3.869714.13194.051419.54575



CDS Structure of MLOC_32225






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_32225.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252346.1NoneNoneNoneNone
MLOC_32225.1CUST_17984_PI427708080AvailableAvailablecontig_226459 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g62250.1 +2 1e-76 253 134/155 (86%) 13103.m06873 protein zinc finger, C3HC4 type domain containing protein, expressed
TAIR PP10 AT1G72175.1 +2 1e-71 224 107/179 (60%) RING/U-box protein with domain of unknown function (DUF 1232) | chr1:27157978-27159359 FORWARD LENGTH=185