MLOC_32200 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.30139.121786.032499.813
LEAShoots from the seedlings (10 cm shoot stage)5.376015.650974.702125.38844
INF1Young developing inflorescences (5mm)6.542725.236644.691265.93996
INF2Developing inflorescences (1-1.5 cm)4.173384.094815.564416.5724
ROORoots from the seedlings (10 cm shoot stage)1.825134.055896.334437.03223
NODDeveloping tillers at six leaf stage, 3rd internode4.204325.093055.0565420.4445
CAR5Developing grain, bracts removed (5 DPA)5.54434.791574.34846.37855
CAR15Developing grain, bracts removed (15 DPA)2.16772.560742.156397.61743



CDS Structure of MLOC_32200






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_32200.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_32200.2CUST_17633_PI427708080AvailableAvailablecontig_226175 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6None-----
TAIR PP10 AT3G59800.1 -3 2e-16 72 43/64 (67%) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G43795.2); Has 15361 Blast hits to 8061 proteins in 537 species: Archae - 2; Bacteria - 622; Metazoa - 7561; Fungi - 1246; Plants - 920; Viruses - 49; Other Eukaryotes - 4961 (source: NCBI BLink). | chr3:22094597-22096174 REVERSE LENGTH=186