MLOC_32111 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains18.094714.246714.535317.4175
LEAShoots from the seedlings (10 cm shoot stage)11.37666.072865.423056.88641
INF1Young developing inflorescences (5mm)12.874715.077115.454313.9078
INF2Developing inflorescences (1-1.5 cm)9.185078.600778.4701410.9223
ROORoots from the seedlings (10 cm shoot stage)16.738918.682522.867526.4604
NODDeveloping tillers at six leaf stage, 3rd internode32.777525.68836.236197.8422
CAR5Developing grain, bracts removed (5 DPA)17.22817.398418.947820.3094
CAR15Developing grain, bracts removed (15 DPA)1.166011.079091.403213.15909



CDS Structure of MLOC_32111






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_32111.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252350.1NoneNoneNoneNone
MLOC_32111.1CUST_2126_PI427708080AvailableAvailablecontig_225328 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g48640.2 +2 5e-141 419 211/297 (71%) 13107.m05213 protein short-chain dehydrogenase/reductase, putative, expressed
TAIR PP10 AT3G61220.1 +2 5e-79 256 138/296 (47%) NAD(P)-binding Rossmann-fold superfamily protein | chr3:22663025-22664316 FORWARD LENGTH=296