MLOC_32082 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4702390.8557751.68210.947168
LEAShoots from the seedlings (10 cm shoot stage)00.7782350.7807311.29454
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)7.89724.4768512.12127.0555
NODDeveloping tillers at six leaf stage, 3rd internode1.111351.283560.9490833.04795
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)0.2888510.33509601.59691



CDS Structure of MLOC_32082






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_32082.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_32082.1CUST_4553_PI427708083AvailableAvailablecontig_2251021 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g38700.1 +2 2e-27 102 49/72 (68%) 13110.m03525 protein glutathione S-transferase, putative, expressed
TAIR PP10 AT1G10370.1 +2 6e-19 78 35/65 (54%) | Symbols: GST30, ATGSTU17, GST30B, ERD9 | Glutathione S-transferase family protein | chr1:3397274-3398273 REVERSE LENGTH=227