MLOC_32058 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.64238.471479.5458115.407
LEAShoots from the seedlings (10 cm shoot stage)5.011750.9390372.774613.36646
INF1Young developing inflorescences (5mm)21.19619.182720.418830.8318
INF2Developing inflorescences (1-1.5 cm)19.200223.846818.794437.9621
ROORoots from the seedlings (10 cm shoot stage)6.447044.670786.64859.02804
NODDeveloping tillers at six leaf stage, 3rd internode0.49860.5901721.553622.57562
CAR5Developing grain, bracts removed (5 DPA)8.459234.821495.5333810.7454
CAR15Developing grain, bracts removed (15 DPA)0.3541560.6101590.5156061.87138



CDS Structure of MLOC_32058






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_32058.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_32058.1CUST_12066_PI427708083AvailableAvailablecontig_2248132 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g17100.1 +2 4e-30 108 76/88 (86%) 13103.m02043 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT5G02560.1 +2 8e-27 99 71/87 (82%) | Symbols: HTA12 | histone H2A 12 | chr5:575437-576456 FORWARD LENGTH=153