MLOC_31972 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains17.978420.651917.320914.08
LEAShoots from the seedlings (10 cm shoot stage)18.74217.8722211.50579.12099
INF1Young developing inflorescences (5mm)60.541861.627262.795135.855
INF2Developing inflorescences (1-1.5 cm)47.906338.629642.365136.7497
ROORoots from the seedlings (10 cm shoot stage)6.5552813.796510.322910.5141
NODDeveloping tillers at six leaf stage, 3rd internode1.703442.392946.433118.52446
CAR5Developing grain, bracts removed (5 DPA)13.480515.864618.261211.2774
CAR15Developing grain, bracts removed (15 DPA)6.380276.087532.892619.30335



CDS Structure of MLOC_31972






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_31972.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_31972.1CUST_4535_PI427708083AvailableAvailablecontig_2239656 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g40250.1 +1 4e-86 286 149/221 (67%) 13101.m04117 protein down-regulated in metastasis family protein, expressed
TAIR PP10 AT4G30990.2 +1 3e-35 138 84/234 (36%) ARM repeat superfamily protein | chr4:15084456-15097860 FORWARD LENGTH=2620