MLOC_31969 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.440635.149176.646545.77611
LEAShoots from the seedlings (10 cm shoot stage)5.35473.962674.035113.59939
INF1Young developing inflorescences (5mm)3.622544.445663.862093.36431
INF2Developing inflorescences (1-1.5 cm)5.725925.782315.945126.24237
ROORoots from the seedlings (10 cm shoot stage)9.355428.942538.9439310.0014
NODDeveloping tillers at six leaf stage, 3rd internode5.383835.364345.4332815.953
CAR5Developing grain, bracts removed (5 DPA)6.854897.175417.538886.82155
CAR15Developing grain, bracts removed (15 DPA)3.744744.069534.283589.34108



CDS Structure of MLOC_31969






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_31969.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373634NoneNoneNoneNone
MLOC_31969.1CUST_2124_PI427708080AvailableAvailablecontig_223946 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g67040.2 +2 3e-152 443 238/274 (87%) 13101.m07269 protein OsRhmbd5 - Putative Rhomboid homologue, expressed
TAIR PP10 AT3G59520.1 +2 2e-121 363 194/266 (73%) | Symbols: ATRBL13, RBL13 | RHOMBOID-like protein 13 | chr3:21992054-21992863 FORWARD LENGTH=269