MLOC_31926 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.529822.981662.219682.18623
LEAShoots from the seedlings (10 cm shoot stage)8.8320314.97258.806057.8957
INF1Young developing inflorescences (5mm)6.475834.421756.7884.74929
INF2Developing inflorescences (1-1.5 cm)6.464667.57314.612966.8028
ROORoots from the seedlings (10 cm shoot stage)1.330652.386693.366232.172
NODDeveloping tillers at six leaf stage, 3rd internode8.155515.4555810.428216.1198
CAR5Developing grain, bracts removed (5 DPA)3.464855.759445.073554.31134
CAR15Developing grain, bracts removed (15 DPA)1.565261.654412.347574.00127



CDS Structure of MLOC_31926






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_31926.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_31926.3CUST_17631_PI427708080AvailableAvailablecontig_223558 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g07570.1 +1 2e-23 96 39/46 (85%) 13109.m00608 protein ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor, putative, expressed
TAIR PP10 AT2G04700.1 +1 1e-21 91 36/46 (78%) ferredoxin thioredoxin reductase catalytic beta chain family protein | chr2:1646961-1648345 FORWARD LENGTH=146