MLOC_31680 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.876341.732033.077321.97226
LEAShoots from the seedlings (10 cm shoot stage)5.421355.170617.052874.14158
INF1Young developing inflorescences (5mm)7.223236.253548.250725.48223
INF2Developing inflorescences (1-1.5 cm)10.604911.788.6333111.0924
ROORoots from the seedlings (10 cm shoot stage)0.8261236.009622.429784.59261
NODDeveloping tillers at six leaf stage, 3rd internode3.141566.56037.01216.6527
CAR5Developing grain, bracts removed (5 DPA)7.354477.057087.984686.38848
CAR15Developing grain, bracts removed (15 DPA)3.653053.178985.158128.01304



CDS Structure of MLOC_31680






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_31680.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_31680.1CUST_12054_PI427708083AvailableAvailablecontig_221288 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g67054.2 -3 5e-26 104 49/53 (92%) 13101.m07271 protein calreticulin precursor protein, putative, expressed
TAIR PP10 AT1G08450.2 -3 2e-21 91 42/53 (79%) | Symbols: CRT3, PSL1, EBS2, AtCRT3 | calreticulin 3 | chr1:2668008-2671800 REVERSE LENGTH=370