MLOC_31632 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.539023.716134.496384.70333
LEAShoots from the seedlings (10 cm shoot stage)2.8824.004925.704033.98676
INF1Young developing inflorescences (5mm)5.959667.544737.910436.29401
INF2Developing inflorescences (1-1.5 cm)6.41269.553927.144178.88309
ROORoots from the seedlings (10 cm shoot stage)5.056014.032435.943846.00846
NODDeveloping tillers at six leaf stage, 3rd internode10.896416.232420.44555.8155
CAR5Developing grain, bracts removed (5 DPA)2.284462.232812.694722.38275
CAR15Developing grain, bracts removed (15 DPA)1.489250.9289150.803582.77704



CDS Structure of MLOC_31632






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_31632.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_31632.2CUST_12053_PI427708083AvailableAvailablecontig_220741 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g01920.1 +3 6e-31 120 56/61 (92%) 13103.m00130 protein expressed protein
TAIR PP10 AT4G34090.1 +3 6e-24 100 46/61 (75%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:16328051-16330110 REVERSE LENGTH=330