MLOC_31479 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.001685.848075.013064.9287
LEAShoots from the seedlings (10 cm shoot stage)3.217615.095336.403214.37452
INF1Young developing inflorescences (5mm)2.478234.754094.147732.95885
INF2Developing inflorescences (1-1.5 cm)8.71937.368856.768818.34306
ROORoots from the seedlings (10 cm shoot stage)3.416092.766022.632073.68423
NODDeveloping tillers at six leaf stage, 3rd internode3.307253.476245.4811113.1493
CAR5Developing grain, bracts removed (5 DPA)5.961425.310756.158525.39209
CAR15Developing grain, bracts removed (15 DPA)5.378414.692684.9320110.9902



CDS Structure of MLOC_31479






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_31479.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_31479.2CUST_12047_PI427708083AvailableAvailablecontig_219309 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g09252.1 +1 6e-39 136 65/84 (77%) 13101.m00982 protein WD domain, G-beta repeat domain containing protein, expressed
TAIR PP10 AT5G51980.1 +1 3e-22 93 42/89 (47%) Transducin/WD40 repeat-like superfamily protein | chr5:21113650-21115902 REVERSE LENGTH=437