MLOC_31149 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains001.353881.47241
LEAShoots from the seedlings (10 cm shoot stage)1.070870.5526110.960361.46608
INF1Young developing inflorescences (5mm)1.435863.883482.209453.92537
INF2Developing inflorescences (1-1.5 cm)7.270284.707024.8336611.9011
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0.5082591.556660.76393711.3498
CAR5Developing grain, bracts removed (5 DPA)2.03240.5181010.303921.85987
CAR15Developing grain, bracts removed (15 DPA)0.8249590.2966290.4181881.7957



CDS Structure of MLOC_31149






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_31149.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_31149.1CUST_4424_PI427708083AvailableAvailablecontig_216171 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g39940.1 -1 9e-25 96 45/62 (73%) 13107.m04148 protein helix-loop-helix DNA-binding domain containing protein
TAIR PP10 AT2G14760.1 -1 8e-25 95 45/62 (73%) basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:6321840-6323312 REVERSE LENGTH=328