MLOC_30979 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.750233.974245.914544.42339
LEAShoots from the seedlings (10 cm shoot stage)8.8539110.582910.3716.13733
INF1Young developing inflorescences (5mm)8.2460311.381513.33765.96299
INF2Developing inflorescences (1-1.5 cm)7.666278.2629610.84216.72732
ROORoots from the seedlings (10 cm shoot stage)16.245110.361316.921910.6096
NODDeveloping tillers at six leaf stage, 3rd internode8.403088.8016510.234522.5483
CAR5Developing grain, bracts removed (5 DPA)9.232947.348248.462215.68665
CAR15Developing grain, bracts removed (15 DPA)1.873342.272251.673753.00499



CDS Structure of MLOC_30979






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_30979.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_30979.1NoneAvailableAvailablecontig_214512 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g16146.1 -3 1e-26 109 52/64 (81%) 13101.m01794 protein phenazine biosynthesis protein, putative, expressed
TAIR PP10 AT1G03210.1 -3 9e-15 74 34/63 (54%) Phenazine biosynthesis PhzC/PhzF protein | chr1:782948-784240 FORWARD LENGTH=286