MLOC_30949 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.032691.9023302.77239
LEAShoots from the seedlings (10 cm shoot stage)5.9115604.68345.84234
INF1Young developing inflorescences (5mm)0.7702430.8364453.849091.8403
INF2Developing inflorescences (1-1.5 cm)2.861.982010.901893.13757
ROORoots from the seedlings (10 cm shoot stage)5.469082.061068.239963.927
NODDeveloping tillers at six leaf stage, 3rd internode3.293236.606568.3396927.6105
CAR5Developing grain, bracts removed (5 DPA)3.605572.445992.649913.7386
CAR15Developing grain, bracts removed (15 DPA)2.195782.4516709.09395



CDS Structure of MLOC_30949






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_30949.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_30949.1CUST_4393_PI427708083AvailableAvailablecontig_2142495 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g05280.1 +3 9e-19 79 37/45 (82%) 13105.m00547 protein zinc finger family protein, putative, expressed
TAIR PP10 AT3G47990.1 +3 3e-16 71 30/35 (86%) | Symbols: SIS3 | SUGAR-INSENSITIVE 3 | chr3:17713367-17716051 REVERSE LENGTH=358