MLOC_30926 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.0547837000.0383966
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)00.2047930.2435680.272531
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0.6456061.190650.6532160.887618
CAR15Developing grain, bracts removed (15 DPA)0.2355990.1049030.04227650.371102



CDS Structure of MLOC_30926






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_30926.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_30926.1CUST_10800_PI427708080AvailableAvailablecontig_214035 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g45100.1 -2 3e-37 136 87/152 (57%) 13102.m05055 protein mitochondrial import inner membrane translocase subunit Tim17, putative, expressed
TAIR PP10 AT3G04800.1 -2 7e-26 103 70/146 (48%) | Symbols: ATTIM23-3, TIM23-3 | translocase inner membrane subunit 23-3 | chr3:1314479-1315045 REVERSE LENGTH=188