MLOC_30920 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.45372.050184.351632.93415
LEAShoots from the seedlings (10 cm shoot stage)76.0718.562232.5497125.0659
INF1Young developing inflorescences (5mm)0.384530.14010600.248871
INF2Developing inflorescences (1-1.5 cm)10.273910.0748.2830110.9947
ROORoots from the seedlings (10 cm shoot stage)267.46886.199364.2284123.011
NODDeveloping tillers at six leaf stage, 3rd internode0.2273610.04662280.07640810.177416
CAR5Developing grain, bracts removed (5 DPA)14.962622.520636.760524.1053
CAR15Developing grain, bracts removed (15 DPA)474.454442.212458.0941068.98



CDS Structure of MLOC_30920






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_30920.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_30920.1CUST_10798_PI427708080AvailableAvailablecontig_21395 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g04360.1 -2 3e-31 112 58/72 (81%) 13101.m00395 protein hsp20/alpha crystallin family protein, putative, expressed
TAIR PP10 AT5G59720.1 -2 3e-23 91 47/70 (67%) | Symbols: HSP18.2 | heat shock protein 18.2 | chr5:24062632-24063117 FORWARD LENGTH=161