MLOC_30915 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains57.014656.130664.033863.9126
LEAShoots from the seedlings (10 cm shoot stage)37.078530.80733.240730.2419
INF1Young developing inflorescences (5mm)71.940273.266967.869467.9177
INF2Developing inflorescences (1-1.5 cm)48.01756.008457.661365.7526
ROORoots from the seedlings (10 cm shoot stage)44.112751.431552.681863.6596
NODDeveloping tillers at six leaf stage, 3rd internode34.841430.812523.975390.6282
CAR5Developing grain, bracts removed (5 DPA)63.54968.345468.845674.8463
CAR15Developing grain, bracts removed (15 DPA)27.013323.027420.141465.0489



CDS Structure of MLOC_30915






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_30915.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_30915.1CUST_4385_PI427708083AvailableAvailablecontig_213912 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g21970.1 -3 3e-140 403 203/207 (98%) 13102.m02462 protein 26S protease regulatory subunit 6B, putative, expressed
TAIR PP10 AT5G58290.1 -3 9e-134 385 194/207 (94%) | Symbols: RPT3 | regulatory particle triple-A ATPase 3 | chr5:23569155-23571116 FORWARD LENGTH=408