MLOC_309 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.971995.117724.531515.13719
LEAShoots from the seedlings (10 cm shoot stage)5.157152.202432.971492.99698
INF1Young developing inflorescences (5mm)10.811210.219711.949210.4614
INF2Developing inflorescences (1-1.5 cm)17.413116.908216.175120.2698
ROORoots from the seedlings (10 cm shoot stage)3.0595.738015.102496.75565
NODDeveloping tillers at six leaf stage, 3rd internode1.320961.935452.269136.63069
CAR5Developing grain, bracts removed (5 DPA)8.967048.86868.5299.61022
CAR15Developing grain, bracts removed (15 DPA)5.490164.83924.6384612.6354



CDS Structure of MLOC_309






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_309.7
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_309.7CUST_4383_PI427708083AvailableAvailablecontig_10214 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g52750.2 +3 1e-35 129 61/82 (74%) 13103.m05753 protein cyclin, putative, expressed
TAIR PP10 AT5G27620.1 +3 3e-15 70 35/81 (43%) | Symbols: CYCH;1 | cyclin H;1 | chr5:9771762-9774684 FORWARD LENGTH=336