MLOC_3087 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.98124.974025.160834.09572
LEAShoots from the seedlings (10 cm shoot stage)5.464316.088711.32656.09243
INF1Young developing inflorescences (5mm)0.9157251.236851.07370.799776
INF2Developing inflorescences (1-1.5 cm)0.5525340.8939190.8467610.761361
ROORoots from the seedlings (10 cm shoot stage)7.785269.429588.0645910.1189
NODDeveloping tillers at six leaf stage, 3rd internode0.8381510.9946681.543113.22558
CAR5Developing grain, bracts removed (5 DPA)0.8270980.8235050.6225480.695763
CAR15Developing grain, bracts removed (15 DPA)0.3239350.2782660.35610.640809



CDS Structure of MLOC_3087






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_3087.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_3087.1CUST_10794_PI427708080AvailableAvailablecontig_127738 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g32370.1 -1 0.0 883 506/633 (80%) 13104.m03100 protein hydroxyproline-rich glycoprotein family protein, putative, expressed
TAIR PP10 AT2G33490.1 -1 1e-121 382 274/652 (42%) hydroxyproline-rich glycoprotein family protein | chr2:14183552-14187666 FORWARD LENGTH=623