MLOC_3083 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.3002415.554511.01788.49579
LEAShoots from the seedlings (10 cm shoot stage)13.391312.86249.593958.61807
INF1Young developing inflorescences (5mm)42.616436.943130.921325.2374
INF2Developing inflorescences (1-1.5 cm)50.434237.00635.592337.4443
ROORoots from the seedlings (10 cm shoot stage)3.4187513.360612.941510.4661
NODDeveloping tillers at six leaf stage, 3rd internode4.845037.5705910.878121.0272
CAR5Developing grain, bracts removed (5 DPA)17.201918.19116.493213.1692
CAR15Developing grain, bracts removed (15 DPA)11.276612.19358.4606419.2073



CDS Structure of MLOC_3083






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_3083.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_3083.1CUST_4370_PI427708083AvailableAvailablecontig_12770 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g28090.1 +1 2e-40 145 67/67 (100%) 13104.m02658 protein MYB family transcription factor, putative, expressed
TAIR PP10 AT1G09770.1 +1 4e-37 135 62/67 (93%) | Symbols: ATCDC5, CDC5, ATMYBCDC5 | cell division cycle 5 | chr1:3162002-3165122 FORWARD LENGTH=844