MLOC_30818 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.860834.111429.174820.1067
LEAShoots from the seedlings (10 cm shoot stage)35.429322.852224.739619.5462
INF1Young developing inflorescences (5mm)30.121331.250931.953118.6556
INF2Developing inflorescences (1-1.5 cm)32.878338.081527.969730.9674
ROORoots from the seedlings (10 cm shoot stage)13.699620.897723.214318.3591
NODDeveloping tillers at six leaf stage, 3rd internode29.602318.873422.669658.386
CAR5Developing grain, bracts removed (5 DPA)20.828226.147621.222717.1299
CAR15Developing grain, bracts removed (15 DPA)10.568210.415811.884117.7609



CDS Structure of MLOC_30818






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_30818.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_30818.1CUST_12029_PI427708083AvailableAvailablecontig_212923 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g42750.2 -2 2e-36 137 74/89 (83%) 13103.m04595 protein roothairless 1, putative, expressed
TAIR PP10 AT1G47560.1 -2 4e-22 96 50/87 (57%) | Symbols: SEC3B | exocyst complex component sec3B | chr1:17466751-17473190 FORWARD LENGTH=887