MLOC_30677 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.1017460.3265910.217776
LEAShoots from the seedlings (10 cm shoot stage)0.395391.164140.3094810.476434
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode00.03649490.05877520.184065
CAR5Developing grain, bracts removed (5 DPA)0.213240.2830010.4735060.253726
CAR15Developing grain, bracts removed (15 DPA)00.11463100.230311



CDS Structure of MLOC_30677






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_30677.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_30677.2CUST_4354_PI427708083AvailableAvailablecontig_211790 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g27290.1 +2 6e-33 125 61/120 (51%) 13108.m02814 protein hAT dimerisation domain-containing protein, putative
TAIR PP10 AT2G06541.2 +2 2e-18 84 47/126 (37%) TTF-type zinc finger protein with HAT dimerisation domain | chr2:2598222-2600326 REVERSE LENGTH=564