MLOC_30654 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.269186.294158.008545.46319
LEAShoots from the seedlings (10 cm shoot stage)15.269912.29799.8076920.3994
INF1Young developing inflorescences (5mm)24.773229.263229.413824.2221
INF2Developing inflorescences (1-1.5 cm)35.508333.798328.138838.8366
ROORoots from the seedlings (10 cm shoot stage)4.491515.832624.449987.07661
NODDeveloping tillers at six leaf stage, 3rd internode4.1182210.223317.54641.5309
CAR5Developing grain, bracts removed (5 DPA)10.24113.654911.965814.0807
CAR15Developing grain, bracts removed (15 DPA)19.959918.474314.879746.0937



CDS Structure of MLOC_30654






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_30654.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_30654.1CUST_12024_PI427708083AvailableAvailablecontig_2116714 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g23180.1 +3 6e-16 73 33/41 (80%) 13112.m02355 protein 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed
TAIR PP10 AT1G09340.1 +3 2e-14 68 29/41 (71%) | Symbols: CRB, CSP41B, HIP1.3 | chloroplast RNA binding | chr1:3015473-3018035 FORWARD LENGTH=378