MLOC_30567 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.173950.5719921.09751.15071
LEAShoots from the seedlings (10 cm shoot stage)0.41513000.371399
INF1Young developing inflorescences (5mm)0.602631.174421.193060.972672
INF2Developing inflorescences (1-1.5 cm)0.4119420.821580.8653030.881586
ROORoots from the seedlings (10 cm shoot stage)0.634851.500902.1619
NODDeveloping tillers at six leaf stage, 3rd internode0.1840750.08444990.2632280.319114
CAR5Developing grain, bracts removed (5 DPA)0.8785531.65740.627651.28718
CAR15Developing grain, bracts removed (15 DPA)0.647230.2495190.9453121.41986



CDS Structure of MLOC_30567






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_30567.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_30567.1CUST_4344_PI427708083AvailableAvailablecontig_2109659 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g53950.1 -3 9e-29 110 53/73 (73%) 13103.m05908 protein strictosidine synthase, putative, expressed
TAIR PP10 AT1G08470.1 -3 2e-18 81 35/73 (48%) | Symbols: SSL3 | strictosidine synthase-like 3 | chr1:2682262-2683977 REVERSE LENGTH=390