MLOC_30445 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.937161.824272.400711.97979
LEAShoots from the seedlings (10 cm shoot stage)1.145693.416622.72641.62596
INF1Young developing inflorescences (5mm)0.6141041.540221.386840.785153
INF2Developing inflorescences (1-1.5 cm)1.130920.8215080.1560290.816773
ROORoots from the seedlings (10 cm shoot stage)4.865891.214071.603292.20565
NODDeveloping tillers at six leaf stage, 3rd internode1.483560.7521450.755272.53914
CAR5Developing grain, bracts removed (5 DPA)0.8650890.1297040.5014680.418993
CAR15Developing grain, bracts removed (15 DPA)1.026550.69193802.43413



CDS Structure of MLOC_30445






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_30445.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_30445.1CUST_12021_PI427708083AvailableAvailablecontig_209751 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g08960.2 -1 5e-29 107 49/53 (92%) 13105.m00994 protein ubiquitin-conjugating enzyme, putative, expressed
TAIR PP10 AT2G02760.1 -1 1e-28 106 48/53 (91%) | Symbols: ATUBC2, UBC2 | ubiquiting-conjugating enzyme 2 | chr2:774271-775149 FORWARD LENGTH=152