MLOC_30423 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4082380.18585900.336308
LEAShoots from the seedlings (10 cm shoot stage)00.3361230.9203240.947813
INF1Young developing inflorescences (5mm)000.1817170.20476
INF2Developing inflorescences (1-1.5 cm)1.1679600.5708260.954542
ROORoots from the seedlings (10 cm shoot stage)4.307272.950311.007983.97552
NODDeveloping tillers at six leaf stage, 3rd internode0.2365671.335494.22247.64224
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)0.6399850.2943380.3832481.32106



CDS Structure of MLOC_30423






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_30423.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_30423.1CUST_12018_PI427708083AvailableAvailablecontig_2094804 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g35960.1 +1 2e-29 108 61/102 (60%) 13106.m03713 protein HSF-type DNA-binding domain containing protein, expressed
TAIR PP10 AT3G24520.1 +1 1e-15 71 40/95 (42%) | Symbols: AT-HSFC1, HSFC1 | heat shock transcription factor C1 | chr3:8941455-8942531 FORWARD LENGTH=330