MLOC_30372 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.04331860.06205530.0629226
LEAShoots from the seedlings (10 cm shoot stage)0.2232510.2402550.2118060.202294
INF1Young developing inflorescences (5mm)00.042422400.0444689
INF2Developing inflorescences (1-1.5 cm)0.03893420.07178170.04975120.0648046
ROORoots from the seedlings (10 cm shoot stage)00.19492300.644162
NODDeveloping tillers at six leaf stage, 3rd internode0.03388630.1930940.02387790.519715
CAR5Developing grain, bracts removed (5 DPA)0.14223200.04813550.112744
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_30372






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_30372.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_30372.1NoneAvailableAvailablecontig_208869 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g52880.1 -1 1e-49 179 110/148 (74%) 13103.m05768 protein BTBN9 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
TAIR PP10 AT5G66560.1 -1 1e-17 85 58/145 (40%) Phototropic-responsive NPH3 family protein | chr5:26564368-26566662 FORWARD LENGTH=668