MLOC_30330 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.0624360.1883530.17280.121575
LEAShoots from the seedlings (10 cm shoot stage)0.181160.02765850.1203950.0913465
INF1Young developing inflorescences (5mm)1.226821.229241.058910.840952
INF2Developing inflorescences (1-1.5 cm)1.368231.347671.213751.20575
ROORoots from the seedlings (10 cm shoot stage)0.02837730.1858720.04851890.134679
NODDeveloping tillers at six leaf stage, 3rd internode0.04960360.04931250.05337950.129544
CAR5Developing grain, bracts removed (5 DPA)1.034210.7908561.081340.735238
CAR15Developing grain, bracts removed (15 DPA)0.1541040.1470360.2469310.317905



CDS Structure of MLOC_30330






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_30330.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_30330.1CUST_4317_PI427708083AvailableAvailablecontig_208478 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g05940.1 +2 2e-171 533 313/419 (75%) 13108.m00591 protein retrotransposon protein, putative, unclassified, expressed
TAIR PP10 AT4G35800.1 +2 7e-142 480 300/424 (71%) | Symbols: NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS | RNA polymerase II large subunit | chr4:16961115-16967892 REVERSE LENGTH=1839