MLOC_30312 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains46.871238.309239.636644.5423
LEAShoots from the seedlings (10 cm shoot stage)22.673910.998514.187213.9986
INF1Young developing inflorescences (5mm)65.905556.839356.30657.6965
INF2Developing inflorescences (1-1.5 cm)54.765844.425244.37759.6961
ROORoots from the seedlings (10 cm shoot stage)56.572228.899235.195842.6448
NODDeveloping tillers at six leaf stage, 3rd internode3.173930.8000223.174414.1586
CAR5Developing grain, bracts removed (5 DPA)49.573544.609945.79552.2738
CAR15Developing grain, bracts removed (15 DPA)22.232318.935512.364849.4923



CDS Structure of MLOC_30312






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_30312.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_30312.1CUST_4313_PI427708083AvailableAvailablecontig_208341 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g42450.1 +1 4e-25 98 46/54 (85%) 13107.m04437 protein ribosomal protein S2, putative, expressed
TAIR PP10 AT3G04770.2 +1 6e-22 88 39/54 (72%) | Symbols: RPSAb | 40s ribosomal protein SA B | chr3:1309544-1310846 REVERSE LENGTH=280