MLOC_30232 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.0736111.01029.761448.8725
LEAShoots from the seedlings (10 cm shoot stage)12.16029.046199.224198.65955
INF1Young developing inflorescences (5mm)15.489113.798215.20211.4902
INF2Developing inflorescences (1-1.5 cm)18.435217.796618.050818.6081
ROORoots from the seedlings (10 cm shoot stage)3.465867.864836.907188.31127
NODDeveloping tillers at six leaf stage, 3rd internode5.060357.554348.7474925.9388
CAR5Developing grain, bracts removed (5 DPA)15.990413.751214.881113.4803
CAR15Developing grain, bracts removed (15 DPA)4.328853.746393.994768.38816



CDS Structure of MLOC_30232






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_30232.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_30232.3CUST_10729_PI427708080AvailableAvailablecontig_207544 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g02970.1 +1 0.0 2776 1409/1585 (89%) 13103.m00273 protein Dicer, putative, expressed
TAIR PP10 AT1G01040.2 +1 0.0 2394 1222/1634 (75%) | Symbols: DCL1 | dicer-like 1 | chr1:23519-31079 FORWARD LENGTH=1910