MLOC_30227 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.244721.421461.752291.06144
LEAShoots from the seedlings (10 cm shoot stage)796.9722294.512652.491130.62
INF1Young developing inflorescences (5mm)0.09103850.5382610.6595420.235805
INF2Developing inflorescences (1-1.5 cm)0.1441950.6044531.290610.430512
ROORoots from the seedlings (10 cm shoot stage)1.135790.6721394.045180.916467
NODDeveloping tillers at six leaf stage, 3rd internode74.606773.427148.873197.803
CAR5Developing grain, bracts removed (5 DPA)35.01748.290851.910730.386
CAR15Developing grain, bracts removed (15 DPA)4.280075.643824.332917.24207



CDS Structure of MLOC_30227






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_30227.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_30227.1NoneAvailableAvailablecontig_207537 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g19381.1 -1 9e-66 208 94/113 (83%) 13112.m02058 protein ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed
TAIR PP10 AT1G67090.1 -1 4e-56 183 82/112 (73%) | Symbols: RBCS1A | ribulose bisphosphate carboxylase small chain 1A | chr1:25048465-25049249 REVERSE LENGTH=180