MLOC_29694 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains36.022417.712920.70831.1149
LEAShoots from the seedlings (10 cm shoot stage)10.24122.032515.40177.27054
INF1Young developing inflorescences (5mm)41.87641.700453.133752.0533
INF2Developing inflorescences (1-1.5 cm)25.246536.379236.3750.4143
ROORoots from the seedlings (10 cm shoot stage)38.233218.937523.521629.1844
NODDeveloping tillers at six leaf stage, 3rd internode4.016815.3578116.297419.3308
CAR5Developing grain, bracts removed (5 DPA)14.172719.196719.433118.6451
CAR15Developing grain, bracts removed (15 DPA)3.803834.672551.727818.5113



CDS Structure of MLOC_29694






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_29694.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_29694.1CUST_11991_PI427708083AvailableAvailablecontig_202844 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g39410.1 -1 2e-21 87 42/42 (100%) 13110.m03607 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT1G07660.2 -1 7e-22 87 42/42 (100%) Histone superfamily protein | chr1:2369212-2369523 FORWARD LENGTH=86