MLOC_29562 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.9955510.16299.362466.09191
LEAShoots from the seedlings (10 cm shoot stage)11.76798.5695210.20417.15126
INF1Young developing inflorescences (5mm)20.107122.230124.72612.8697
INF2Developing inflorescences (1-1.5 cm)43.906938.367640.745232.3298
ROORoots from the seedlings (10 cm shoot stage)3.102349.606769.914347.36469
NODDeveloping tillers at six leaf stage, 3rd internode8.9674412.49478.9211834.9617
CAR5Developing grain, bracts removed (5 DPA)29.789929.688828.554519.4844
CAR15Developing grain, bracts removed (15 DPA)15.0614.857715.985422.4111



CDS Structure of MLOC_29562






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_29562.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_29562.4NoneAvailableAvailablecontig_201644 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g53800.5 +3 4e-20 96 46/59 (78%) 13103.m05883 protein periplasmic beta-glucosidase precursor, putative, expressed
TAIR PP10 AT5G04885.1 +3 7e-15 79 39/58 (67%) Glycosyl hydrolase family protein | chr5:1423369-1426628 FORWARD LENGTH=665