MLOC_29543 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.28735100.354670.465526
LEAShoots from the seedlings (10 cm shoot stage)1.663020.473351.691381.2437
INF1Young developing inflorescences (5mm)00.2293620.2621180.541388
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0.8574270.6816711.514673.20414
CAR5Developing grain, bracts removed (5 DPA)00.70622901.10269
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_29543






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_29543.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_29543.1CUST_4213_PI427708083AvailableAvailablecontig_201508 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g49160.1 +1 4e-22 88 44/53 (83%) 13106.m05248 protein thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed
TAIR PP10 AT4G02530.1 +1 6e-16 70 32/52 (62%) chloroplast thylakoid lumen protein | chr4:1112335-1114005 REVERSE LENGTH=216