MLOC_29459 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.668242.327882.50222.50701
LEAShoots from the seedlings (10 cm shoot stage)3.769834.116014.924794.12508
INF1Young developing inflorescences (5mm)3.162952.574753.081192.61436
INF2Developing inflorescences (1-1.5 cm)2.931492.841942.782073.31098
ROORoots from the seedlings (10 cm shoot stage)2.084554.111723.206855.4035
NODDeveloping tillers at six leaf stage, 3rd internode1.885342.759883.8194510.9967
CAR5Developing grain, bracts removed (5 DPA)4.534183.221683.283833.77917
CAR15Developing grain, bracts removed (15 DPA)1.977891.91631.792714.57655



CDS Structure of MLOC_29459






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_29459.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371395NoneNoneNoneNone
MLOC_29459.2CUST_2100_PI427708080AvailableAvailablecontig_200799 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g15270.1 -1 5e-121 401 291/743 (39%) 13107.m01600 protein RNA-binding region RNP-1, putative, expressed
TAIR PP10 AT1G05970.2 -1 1e-43 160 75/184 (41%) RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:1816253-1816991 REVERSE LENGTH=200