morexGenes - Barley RNA-seq Database

Predicted Gene MLOC_29384

Gene IDMLOC_29384
Source Contig contig_200035

Gene Data

|FPKM Values|
|CDS Structures|
|Gene Cluster Members|
|Homology to Models|

morexGenes

Links

MLOC_29384 FPKM values

FPKM by Treatment	FPKM by Replicate

Treatment ID	Treatment Description	Rep 1 FPKM	Rep 2 FPKM	Rep 3 FPKM	Treatment FPKM
EMB	4-day embryos dissected from germinating grains	0.75864	0.558139	0.727346	0.925871
LEA	Shoots from the seedlings (10 cm shoot stage)	0.471715	0.586299	0.191848	0.493448
INF1	Young developing inflorescences (5mm)	1.17846	2.32236	1.24859	1.62783
INF2	Developing inflorescences (1-1.5 cm)	1.46989	3.01678	2.81186	3.54404
ROO	Roots from the seedlings (10 cm shoot stage)	0.185635	0.272659	0	0.575291
NOD	Developing tillers at six leaf stage, 3rd internode	0.361866	0.610982	0.802851	3.47619
CAR5	Developing grain, bracts removed (5 DPA)	0.128906	0.489272	0.2282	0.417088
CAR15	Developing grain, bracts removed (15 DPA)	0.75971	0.628386	0.564049	1.9542

CDS Structure of MLOC_29384

Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by AK360303

Cluster member	Probe ID	FPKM by replicate	FPKM by treatment	Source Contig
AK360303	CUST_24313_PI427708080	None	None	None
MLOC_1524.1	None	Available	None	contig_11350 (Mapped)
MLOC_233.1	None	Available	None	contig_1015798 (Not mapped)
MLOC_27517.1	None	Available	None	contig_1838674 (Mapped)
MLOC_27812.1	None	Available	None	contig_1864852 (Mapped)
MLOC_28444.1	None	Available	None	contig_1918442 (Not mapped)
MLOC_28663.2	None	Available	None	contig_1938399 (Not mapped)
MLOC_29384.2	None	Available	Available	contig_200035 (Not mapped)
MLOC_33185.1	None	Available	None	contig_2351033 (Not mapped)
MLOC_33760.1	None	Available	None	contig_240086 (Mapped)
MLOC_3859.1	None	Available	None	contig_134006 (Not mapped)
MLOC_5227.1	None	Available	None	contig_1360356 (Not mapped)
MLOC_6140.1	None	Available	None	contig_1371096 (Not mapped)
MLOC_80678.1	None	Available	None	contig_921203 (Not mapped)

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP6	None	-	-	-	-	-
TAIR PP10	None	-	-	-	-	-