MLOC_29166 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3637370.7237970.4161650.593707
LEAShoots from the seedlings (10 cm shoot stage)0.8086021.481961.558771.17861
INF1Young developing inflorescences (5mm)1.736532.103042.043221.67311
INF2Developing inflorescences (1-1.5 cm)4.040943.626253.33294.13632
ROORoots from the seedlings (10 cm shoot stage)0.3141430.6241510.7235540.82108
NODDeveloping tillers at six leaf stage, 3rd internode0.4009390.9593311.278143.79275
CAR5Developing grain, bracts removed (5 DPA)0.6010810.8611340.6538510.725312
CAR15Developing grain, bracts removed (15 DPA)0.5119880.6657190.7218271.40622



CDS Structure of MLOC_29166






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_29166.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_29166.4CUST_10643_PI427708080AvailableAvailablecontig_198118 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g33940.1 -3 3e-138 425 265/636 (42%) 13109.m03398 protein expressed protein
TAIR PP10 AT1G05950.1 -3 6e-41 159 149/614 (24%) unknown protein; Has 50 Blast hits to 45 proteins in 14 species: Archae - 5; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:1804573-1807471 REVERSE LENGTH=627