MLOC_29110 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains60.561987.065581.545378.1718
LEAShoots from the seedlings (10 cm shoot stage)69.43934.404430.0237.8436
INF1Young developing inflorescences (5mm)77.639375.241266.590961.1463
INF2Developing inflorescences (1-1.5 cm)58.83967.22857.769665.9666
ROORoots from the seedlings (10 cm shoot stage)62.552588.402265.837494.0087
NODDeveloping tillers at six leaf stage, 3rd internode76.698767.487342.1191187.786
CAR5Developing grain, bracts removed (5 DPA)140.282118.333125.662118.916
CAR15Developing grain, bracts removed (15 DPA)45.250142.748138.31496.4451



CDS Structure of MLOC_29110






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_29110.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251014.1NoneNoneNoneNone
MLOC_29110.1CUST_2093_PI427708080AvailableAvailablecontig_197566 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g04110.2 +2 0.0 2206 1091/1219 (89%) 13109.m00335 protein coatomer alpha subunit, putative, expressed
TAIR PP10 AT1G62020.1 +2 0.0 1946 944/1225 (77%) Coatomer, alpha subunit | chr1:22919814-22923728 FORWARD LENGTH=1216