MLOC_29090 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.432351.066040.8925761.30005
LEAShoots from the seedlings (10 cm shoot stage)3.92094.018052.972633.29538
INF1Young developing inflorescences (5mm)1.472772.236542.15591.98332
INF2Developing inflorescences (1-1.5 cm)1.67771.68931.476992.02376
ROORoots from the seedlings (10 cm shoot stage)0.8958151.360881.838611.71191
NODDeveloping tillers at six leaf stage, 3rd internode3.13561.61182.49646.02703
CAR5Developing grain, bracts removed (5 DPA)2.636272.526141.462032.41421
CAR15Developing grain, bracts removed (15 DPA)0.2527460.5680110.1856331.02844



CDS Structure of MLOC_29090






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_29090.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_29090.1CUST_10640_PI427708080AvailableAvailablecontig_197371 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g37710.1 +2 2e-36 130 60/68 (88%) 13104.m03608 protein serine hydrolase domain containing protein, expressed
TAIR PP10 AT4G24380.2 +2 2e-28 107 53/77 (69%) CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:12612554-12613310 FORWARD LENGTH=171