- Predicted Gene MLOC_29090
MLOC_29090 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_29090_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_29090_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 1.43235 | 1.06604 | 0.892576 | 1.30005 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 3.9209 | 4.01805 | 2.97263 | 3.29538 |
INF1 | Young developing inflorescences (5mm) | 1.47277 | 2.23654 | 2.1559 | 1.98332 |
INF2 | Developing inflorescences (1-1.5 cm) | 1.6777 | 1.6893 | 1.47699 | 2.02376 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.895815 | 1.36088 | 1.83861 | 1.71191 |
NOD | Developing tillers at six leaf stage, 3rd internode | 3.1356 | 1.6118 | 2.4964 | 6.02703 |
CAR5 | Developing grain, bracts removed (5 DPA) | 2.63627 | 2.52614 | 1.46203 | 2.41421 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.252746 | 0.568011 | 0.185633 | 1.02844 |
CDS Structure of MLOC_29090
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_29090.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os04g37710.1 |
+2 |
2e-36 |
130 |
60/68 (88%) |
13104.m03608 protein serine hydrolase domain containing protein, expressed |
TAIR PP10 |
AT4G24380.2 |
+2 |
2e-28 |
107 |
53/77 (69%) |
CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:12612554-12613310 FORWARD LENGTH=171 |