MLOC_29022 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.343919.254614.199212.558
LEAShoots from the seedlings (10 cm shoot stage)22.560624.178316.277213.4668
INF1Young developing inflorescences (5mm)34.333336.991556.372524.7839
INF2Developing inflorescences (1-1.5 cm)49.561549.051777.382748.6055
ROORoots from the seedlings (10 cm shoot stage)12.675329.148326.698421.6501
NODDeveloping tillers at six leaf stage, 3rd internode33.664520.661322.576153.8527
CAR5Developing grain, bracts removed (5 DPA)40.118833.639241.392728.5115
CAR15Developing grain, bracts removed (15 DPA)15.490813.656621.144426.4278



CDS Structure of MLOC_29022






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_29022.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_29022.1CUST_4149_PI427708083AvailableAvailablecontig_196730 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g39960.1 +3 1e-16 55 26/32 (81%) 13105.m04213 protein 40S ribosomal protein S26, putative, expressed
TAIR PP10 AT2G40510.1 +3 6e-12 47 22/32 (69%) Ribosomal protein S26e family protein | chr2:16918506-16919623 FORWARD LENGTH=133