morexGenes - Barley RNA-seq Database

Predicted Gene MLOC_29015

Gene IDMLOC_29015
Source Contig contig_1966601

Gene Data

|FPKM Values|
|CDS Structures|
|Gene Cluster Members|
|Homology to Models|

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MLOC_29015 FPKM values

FPKM by Treatment	FPKM by Replicate

Treatment ID	Treatment Description	Rep 1 FPKM	Rep 2 FPKM	Rep 3 FPKM	Treatment FPKM
EMB	4-day embryos dissected from germinating grains	0.888204	5.52788	4.18315	4.34953
LEA	Shoots from the seedlings (10 cm shoot stage)	4.2333	2.11148	1.37621	2.27838
INF1	Young developing inflorescences (5mm)	9.08424	9.53719	11.588	8.79107
INF2	Developing inflorescences (1-1.5 cm)	20.0467	18.0997	16.0195	20.7414
ROO	Roots from the seedlings (10 cm shoot stage)	1.35388	3.07637	1.58683	3.42556
NOD	Developing tillers at six leaf stage, 3rd internode	1.75876	3.46119	2.34518	10.4003
CAR5	Developing grain, bracts removed (5 DPA)	12.9462	10.2008	12.4492	11.8469
CAR15	Developing grain, bracts removed (15 DPA)	4.45761	3.95246	4.25648	10.2193

CDS Structure of MLOC_29015

Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by AK372440

Cluster member	Probe ID	FPKM by replicate	FPKM by treatment	Source Contig
AK372440	CUST_25642_PI427708080	None	None	None
MLOC_1019.1	None	Available	None	contig_1085557 (Not mapped)
MLOC_24100.1	None	Available	None	contig_1636694 (Mapped)
MLOC_27107.2	None	Available	None	contig_180696 (Not mapped)
MLOC_27559.1	None	Available	None	contig_1843194 (Mapped)
MLOC_29015.1	None	Available	Available	contig_1966601 (Mapped)
MLOC_33706.1	None	Available	None	contig_239659 (Mapped)
MLOC_34133.1	None	Available	None	contig_242538 (Mapped)
MLOC_34154.1	None	Available	None	contig_242618 (Not mapped)
MLOC_41166.1	None	Available	None	contig_2575058 (Mapped)
MLOC_41183.1	None	Available	None	contig_2575568 (Mapped)
MLOC_41235.1	None	Available	None	contig_2578728 (Mapped)
MLOC_41633.1	None	Available	None	contig_2598338 (Not mapped)
MLOC_47987.1	None	Available	None	contig_315801 (Not mapped)
MLOC_49862.1	None	Available	None	contig_349776 (Not mapped)
MLOC_50618.1	None	Available	None	contig_363201 (Not mapped)
MLOC_60770.1	None	Available	None	contig_44760 (Mapped)
MLOC_8482.1	None	Available	None	contig_143367 (Mapped)

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP6	None	-	-	-	-	-
TAIR PP10	None	-	-	-	-	-