MLOC_28874 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)1.25007001.64147
INF2Developing inflorescences (1-1.5 cm)00.9031750.4399810.845631
ROORoots from the seedlings (10 cm shoot stage)0000.456252
NODDeveloping tillers at six leaf stage, 3rd internode1.08460.3986120.1078951.49473
CAR5Developing grain, bracts removed (5 DPA)00.37393400.221733
CAR15Developing grain, bracts removed (15 DPA)00.4559190.6535951.27279



CDS Structure of MLOC_28874






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_28874.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_28874.1CUST_4129_PI427708083AvailableAvailablecontig_195531 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g06820.2 +2 8e-33 120 57/64 (89%) 13107.m00657 protein serine/threonine-protein kinase RIO-like, putative, expressed
TAIR PP10 AT5G37350.2 +2 4e-34 122 58/66 (88%) Serine/threonine-protein kinase Rio1 | chr5:14793837-14795828 FORWARD LENGTH=385