MLOC_28859 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)00.08458930.09949210.159377
INF2Developing inflorescences (1-1.5 cm)0.143150.06581360.0910910.146661
ROORoots from the seedlings (10 cm shoot stage)0.1755390.093057700.236381
NODDeveloping tillers at six leaf stage, 3rd internode0.069571400.05060230.0694447
CAR5Developing grain, bracts removed (5 DPA)331.364336.607292.121333.777
CAR15Developing grain, bracts removed (15 DPA)1.077691.898332.994824.53046



CDS Structure of MLOC_28859






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_28859.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_28859.1CUST_10620_PI427708080AvailableAvailablecontig_195426 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g15710.1 +1 4e-44 147 76/125 (61%) 13102.m01752 protein plastocyanin-like domain containing protein, putative
TAIR PP10 AT2G02850.1 +1 2e-30 111 50/99 (51%) | Symbols: ARPN | plantacyanin | chr2:826630-827720 REVERSE LENGTH=129