MLOC_28802 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.71068.057747.1996311.9778
LEAShoots from the seedlings (10 cm shoot stage)8.832138.9779112.308312.4816
INF1Young developing inflorescences (5mm)6.952986.743387.581478.29446
INF2Developing inflorescences (1-1.5 cm)11.653512.067611.831916.6235
ROORoots from the seedlings (10 cm shoot stage)10.651811.642210.346419.4133
NODDeveloping tillers at six leaf stage, 3rd internode13.432121.330322.115992.1944
CAR5Developing grain, bracts removed (5 DPA)11.9813.059511.249815.129
CAR15Developing grain, bracts removed (15 DPA)5.91734.699653.8257515.3452



CDS Structure of MLOC_28802






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_28802.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_28802.1CUST_11963_PI427708083AvailableAvailablecontig_194849 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g38300.2 -2 3e-40 141 73/86 (85%) 13102.m04213 protein SNF7 domain containing protein, putative, expressed
TAIR PP10 AT5G09260.1 -2 8e-17 77 40/85 (47%) | Symbols: VPS20.2 | vacuolar protein sorting-associated protein 20.2 | chr5:2876797-2878355 FORWARD LENGTH=216