MLOC_28740 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains19.233217.362520.116816.7198
LEAShoots from the seedlings (10 cm shoot stage)13.82149.0393811.97428.58503
INF1Young developing inflorescences (5mm)24.318120.701337.513722.5975
INF2Developing inflorescences (1-1.5 cm)50.909830.267638.64843.4748
ROORoots from the seedlings (10 cm shoot stage)32.70820.403730.765623.2844
NODDeveloping tillers at six leaf stage, 3rd internode16.774812.92630.697739.8091
CAR5Developing grain, bracts removed (5 DPA)19.655918.895121.387419.3265
CAR15Developing grain, bracts removed (15 DPA)6.643865.86778.2279615.9104



CDS Structure of MLOC_28740






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_28740.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_28740.1CUST_11960_PI427708083AvailableAvailablecontig_1944227 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g03090.1 -3 3e-31 117 79/110 (72%) 13101.m00259 protein methyltransferase, putative, expressed
TAIR PP10 AT1G66680.1 -3 1e-19 85 51/109 (47%) | Symbols: AR401 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:24866352-24868888 REVERSE LENGTH=358