MLOC_28652 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.465969.6982310.30388.85925
LEAShoots from the seedlings (10 cm shoot stage)16.975921.372225.533617.3538
INF1Young developing inflorescences (5mm)5.514294.342684.347923.66358
INF2Developing inflorescences (1-1.5 cm)1.809061.604753.331562.03934
ROORoots from the seedlings (10 cm shoot stage)1.42481.450643.461411.8868
NODDeveloping tillers at six leaf stage, 3rd internode8.871846.2835119.720828.1756
CAR5Developing grain, bracts removed (5 DPA)3.344752.206732.66852.31368
CAR15Developing grain, bracts removed (15 DPA)0.399719001.48472



CDS Structure of MLOC_28652






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_28652.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_28652.1CUST_11955_PI427708083AvailableAvailablecontig_19374 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g29220.1 -3 2e-27 106 50/62 (81%) 13107.m02929 protein Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed
TAIR PP10 AT3G23470.1 -3 2e-22 92 42/62 (68%) Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8415565-8418120 FORWARD LENGTH=461