MLOC_28616 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.652374.568784.118194.84491
LEAShoots from the seedlings (10 cm shoot stage)0.0907860.1012780.1739310.102702
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0.2051290.2404100.387479
NODDeveloping tillers at six leaf stage, 3rd internode0.040956400.01448970.0230916
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_28616






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_28616.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_28616.1CUST_4101_PI427708083AvailableAvailablecontig_193449 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g04540.1 +2 0.0 531 259/299 (87%) 13108.m00435 protein decarboxylase, putative, expressed
TAIR PP10 AT2G20340.1 +2 5e-99 305 143/292 (49%) Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr2:8779804-8782490 FORWARD LENGTH=490