MLOC_28615 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.890561.932051.930782.07485
LEAShoots from the seedlings (10 cm shoot stage)1.280090.3676580.1829910.54483
INF1Young developing inflorescences (5mm)4.23624.395754.486854.21434
INF2Developing inflorescences (1-1.5 cm)3.810013.309844.570764.68567
ROORoots from the seedlings (10 cm shoot stage)1.374140.3506861.096850.686424
NODDeveloping tillers at six leaf stage, 3rd internode0.06776350.09388060.4040390.483583
CAR5Developing grain, bracts removed (5 DPA)0.6660641.065030.8487851.01341
CAR15Developing grain, bracts removed (15 DPA)0.0721627000.258627



CDS Structure of MLOC_28615






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_28615.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_28615.1CUST_4100_PI427708083AvailableAvailablecontig_193422 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g17100.1 -1 1e-19 84 40/44 (91%) 13103.m02043 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT5G02560.1 -1 2e-18 79 37/43 (86%) | Symbols: HTA12 | histone H2A 12 | chr5:575437-576456 FORWARD LENGTH=153